AT3G25720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.468 plasma membrane 0.391 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-directed DNA polymerase (reverse transcriptase)-related family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-directed DNA polymerase (reverse transcriptase)-related family protein; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT4G10613.1); Has 517 Blast hits to 476 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 517; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9380234..9381405 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 32473.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.59 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||
| Length | 282 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPFWVCDYD TIPFLIAVCL PKAEGGLGLR WFSEWNTTLN LKLVWRLFSG GGSLWVDWHR YHHLQGLGDA SVSKFWTSQE LVSDSWNWKC LLRLRPLAER 101: FLRCNIGNGL TARFWTDNWT PFGPLLIHIG AARPNRLRIP IEASVADATQ GISWGLPVSP LCCLCSCAPE TRDHLLLGCS FSKALWSSVQ SRLRLHSLIF 201: LNWAELLLWI RRSSTSAPST LRKLVAHSVV YATWKQRNNM LHNSHHLDPA SVFKIIDRKI INSINARRHK KKFRNLMSFW LI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)