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AT3G25650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.790
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SKP1-like 15
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKP1-like 15 (SK15); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 19 (TAIR:AT2G03160.1); Has 1427 Blast hits to 1423 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 537; Fungi - 176; Plants - 536; Viruses - 11; Other Eukaryotes - 167 (source: NCBI BLink).
Protein Annotations
BioGrid:7483eggNOG:COG5201eggNOG:KOG1724EMBL:AP001313
EMBL:CP002686EMBL:DQ446700EnsemblPlants:AT3G25650EnsemblPlants:AT3G25650.1
entrez:822152GeneID:822152Genevisible:Q1PEL7GO:GO:0005634
GO:GO:0006511GO:GO:0016567GO:GO:0019005hmmpanther:PTHR11165
HOGENOM:HOG000172184InParanoid:Q1PEL7IntAct:Q1PEL7InterPro:IPR001232
InterPro:IPR011333InterPro:IPR016072InterPro:IPR016073InterPro:IPR016897
KEGG:ath:AT3G25650KO:K03094OMA:ARESHTIPaxDb:Q1PEL7
Pfam:PF01466Pfam:PF03931Pfam:Q1PEL7PhylomeDB:Q1PEL7
PIRSF:PIRSF028729PRIDE:Q1PEL7PRO:PR:Q1PEL7ProteinModelPortal:Q1PEL7
Proteomes:UP000006548RefSeq:NP_566773.1SMART:SM00512SMR:Q1PEL7
STRING:3702.AT3G25650.1SUPFAM:SSF54695SUPFAM:SSF81382TAIR:AT3G25650
tair10-symbols:ASK15tair10-symbols:SK15UniGene:At.66493UniPathway:UPA00143
UniProt:Q1PEL7
Coordinates (TAIR10) chr3:-:9335876..9336459
Molecular Weight (calculated) 20254.70 Da
IEP (calculated) 4.15
GRAVY (calculated) -0.58
Length 177 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSNKIVLTS SDGESFQVEE VVARKLQIVK HLLEDDCVIN EIPLQNVTGN ILSIVLEYCK KHVDDVVDDD ASEEPKKKKP DDEAKQNLDA WDAEFMKNID
101: METIFKLILA ANYLNVEGLL GLTCQTVADY IKDKTPEEVR ELFNIENDFT HEEEEEAIRK ENAWAFEADT KHEDPKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)