suba logo
AT3G21210.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.982
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : zinc ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway, response to stress; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G34480.1); Has 2127 Blast hits to 1070 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 2085; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
EMBL:AK228572EMBL:BT006183EMBL:BT008519EMBL:CP002686
EnsemblPlants:AT3G21210EnsemblPlants:AT3G21210.1entrez:821674Gene3D:3.30.40.10
Gene3D:3.40.50.620GeneID:821674GO:GO:0005622GO:GO:0006950
GO:GO:0008270GO:GO:0035556GO:GO:0047134Gramene:AT3G21210.1
hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152HOGENOM:HOG000064693InterPro:IPR001965
InterPro:IPR004146InterPro:IPR006016InterPro:IPR011424InterPro:IPR013083
InterPro:IPR014729KEGG:ath:AT3G21210OMA:LRYKHDEPfam:PF00582
Pfam:PF03107Pfam:PF07649PhylomeDB:Q84R08Proteomes:UP000006548
RefSeq:NP_188758.2SMART:SM00249STRING:3702.AT3G21210.1SUPFAM:SSF52402
SUPFAM:SSF57889TAIR:AT3G21210UniGene:At.70384UniGene:At.8075
UniProt:Q84R08
Coordinates (TAIR10) chr3:-:7438241..7440756
Molecular Weight (calculated) 91880.40 Da
IEP (calculated) 7.11
GRAVY (calculated) -0.35
Length 804 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNPESDHPS SPRQRKIGIA VELSEESAFT VRWAVDNYIR QGDDIIILHV SPTAGLFGAD WGYYPLQTQP PYTTASIFSK VADLGKPLKE AGFPHTIHTV
101: KDYDKRERLC LETQRLNLTA LIMGFGDGSV SDFCVHHCVC QVVVVRYPDG PGSVEGTRAA PIVTFKSRTD DDEEIDKAKT ALTASVHHQH IKAMDSVSKQ
201: PLLFCPRAYF TNNEEDFRAM QFREPPNLSS PSFHLTSLVL GNDFNITRKY YYDRHGKGFI KGHRPNKQCE ICSKSLLGTT FYSCTLCLRP SCSPLQSSVL
301: SRSSGYYHEA CIEPISKHPY HPKHALRFRY ESGQICLSCS TFKDFAYHCS ICNFTMCQDC AREPPLFAID YPKRHEHTLF YFQRKGSLIC DVCGLSDGRS
401: LLYSCVKCNF VVHKECVYFP CIIKISRHEH RLSFNSSLTP EQWLCGVCRE SIDTNFARYS CVKGCSFAVH SKCATRKDVW DGKELEGEPE EDESLYIFKS
501: FNEISDGIIE YFRHKSHHMR LDEDTNRAFD EDKRCRACTF PICDDLIYSC MQCDFILHQT CAHLPPRKQH ATHPHPLLLL VDEEHEDYFQ CTACKRESNG
601: FAYTCCARDC NFTLDVSCAS IAESLIHRFH PHPIYLIHES TAQEFCSICG QLIGHRLNCG ECRFALCFGC ATLPNKLRYK HDEHFLIFSY DEDFSGSQES
701: GPHLCEVCEK QANPKNGVYM CNDCNVTLHV ECLLGKEMYM MPIGGLISRN VNVDILPNNR LTRNICQRCH NRCQGKIIFK ARDRSTFLCS LFCCLTKSWV
801: DRDT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)