AT3G15080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1777 Blast hits to 1777 proteins in 250 species: Archae - 0; Bacteria - 24; Metazoa - 732; Fungi - 619; Plants - 217; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5074319..5076327 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31127.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.65 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||||||||||
| Length | 275 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSDLKRKPK KKITPKPVQL NPNWSLLQQK LKSDSHGNTR KSSNPENPSS ILGKRKERPD SEVDVPKINP LAPVNDDSSL TDEVAMDCEM VGVSQGTKSA 101: LGRVTLVNKW GNVLYDEFVR PVEHVVDFRT SISGIRPRDL RKAKDFRVAQ TKVAELIKGK ILVGHALHND LKALLLTHPK KDIRDTGEYQ PFLKGKTRKS 201: LKHLASEILG ADIQNGEHCP IDDARAAMML YQKNRKEWEK TVKDQTRMWL KQKKRKPKKK AKYGNNASTN DNPIV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)