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AT3G13228.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.782
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G18760.1); Has 5838 Blast hits to 5825 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 1731; Fungi - 340; Plants - 2980; Viruses - 20; Other Eukaryotes - 767 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AB024034EMBL:CP002686
EnsemblPlants:AT3G13228EnsemblPlants:AT3G13228.1entrez:820519Gene3D:3.30.40.10
GeneID:820519GO:GO:0008270Gramene:AT3G13228.1hmmpanther:PTHR22937
hmmpanther:PTHR22937:SF18InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT3G13228
OMA:DDECAVKPfam:PF13639Pfscan:PS50089PhylomeDB:Q9LTU8
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_566449.1SMART:SM00184
SMR:Q9LTU8SUPFAM:SSF57850TAIR:AT3G13228UniGene:At.39459
UniProt:Q9LTU8
Coordinates (TAIR10) chr3:+:4267075..4268052
Molecular Weight (calculated) 36434.20 Da
IEP (calculated) 4.25
GRAVY (calculated) -0.05
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MFTVLRVDFS HKIKDDPKPE EAGIIIVNAM IYRETDTLTL TTSSSADELI SDDGNECQIK MDLINILKVA GLSDYDTAHM MYHFIPHVAE IMSSPSEGYS
101: PGSALEVSWC LLLLDVSHIE AAVKVSLDYE IKQDPEPKDS GGTIRVNAVI KNENDILTFT TLTFVNEFLN QDFCLVDWCN FMKEAGISDQ NIPVVIYHIL
201: YVIKITSSAS NGHSPGCALQ VSLYLFPHDE TDIEEAVQVS FDETTNFCLG PASKLVVKSL TRKIYDKINY TGERCTICLE EFNAGGILVA LPCGHDFDDE
301: CAVKWFETNH FCPLCRYELP REEDQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)