suba logo
AT3G10990.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.983
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box associated ubiquitination effector family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G23960.1); Has 614 Blast hits to 600 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 614; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:820270EMBL:AC009991EMBL:CP002686EnsemblPlants:AT3G10990EnsemblPlants:AT3G10990.1entrez:820270GeneID:820270
Gramene:AT3G10990.1hmmpanther:PTHR31790hmmpanther:PTHR31790:SF10HOGENOM:HOG000064703InterPro:IPR013187InterPro:IPR017451KEGG:ath:AT3G10990
OMA:MLPPLWKPfam:PF08268PhylomeDB:Q9SRL0Proteomes:UP000006548RefSeq:NP_187710.1TAIR:AT3G10990TIGRfam:TIGR01640
TIGRFAMs:TIGR01640UniGene:At.65077UniProt:Q9SRL0
Coordinates (TAIR10) chr3:-:3446462..3446995
Molecular Weight (calculated) 20320.70 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.08
Length 177 amino acids
Sequence (TAIR10)
(BLAST)
001: MIECCKPHVP RGTEICINSV LYYTAVEKGS LMVTIVVCFD ISSEKFSFMK VMETFDRDLP SSTTMINYNG KLGLLMTEES TDIVSGTSKS FELRVLEDAE
101: KHDWSKHVYM LPPLWKNVVG EETKLRLLGM VGSCTNEIVF SYKYPSTFMP SYVFYYNIER NTIIRLEIQG MEELNGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)