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AT3G10400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RNA recognition motif and CCHC-type zinc finger domains containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA recognition motif and CCHC-type zinc finger domains containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 867 Blast hits to 867 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 160; Plants - 158; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQXPeggNOG:ENOG4111IY7EMBL:AC011560EMBL:AK228689
EMBL:BT015938EMBL:BT021922EMBL:CP002686EnsemblPlants:AT3G10400
EnsemblPlants:AT3G10400.1entrez:820203Gene3D:3.30.70.330Gene3D:4.10.60.10
GeneID:820203Genevisible:Q9CAE4GO:GO:0000166GO:GO:0000398
GO:GO:0003723GO:GO:0005634GO:GO:0005689GO:GO:0008270
GO:GO:0032502GO:GO:0051302Gramene:AT3G10400.1hmmpanther:PTHR23139
HOGENOM:HOG000007632InParanoid:Q9CAE4InterPro:IPR000504InterPro:IPR001878
InterPro:IPR012677iPTMnet:Q9CAE4KEGG:ath:AT3G10400KO:K13154
ncoils:CoilOMA:DTFYYRYPaxDb:Q9CAE4Pfam:PF00076
Pfam:PF00098Pfam:Q9CAE4Pfscan:PS50102Pfscan:PS50158
PhylomeDB:Q9CAE4PRIDE:Q9CAE4PRO:PR:Q9CAE4PROSITE:PS50102
PROSITE:PS50158ProteinModelPortal:Q9CAE4Proteomes:UP000006548Reactome:R-ATH-72165
RefSeq:NP_187651.1SMART:SM00343SMART:SM00360SMR:Q9CAE4
STRING:3702.AT3G10400.1SUPFAM:SSF54928SUPFAM:SSF57756TAIR:AT3G10400
UniGene:At.39936UniProt:Q9CAE4
Coordinates (TAIR10) chr3:+:3232636..3233421
Molecular Weight (calculated) 29368.90 Da
IEP (calculated) 7.13
GRAVY (calculated) -1.07
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKRKIHHSD DEEDDTFYYR YSSVAAPPPS NPKHQPSSSA KSSAPGGGSG GLAPSKSTLY VSNLDFSLTN SDIHTLFSTF GKVARVTVLK DRHTRQSRGV
101: AFVLYVSRED AAKAARSMDA KILNGRKLTV SIAADNGRAS EFIKKRVYKD KSRCYECGDE GHLSYECPKN QLGPRERPPP PKKRGRRKEE EGEAEEISWS
201: AAAPSLAVAE EEFEEENWAS VVDNEAGERL RKREAEEEEE RRMKRKEKKV SYFSDESDDE D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)