AT2G39240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA polymerase I specific transcription initiation factor RRN3 protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA polymerase I specific transcription initiation factor RRN3 protein; FUNCTIONS IN: RNA polymerase I transcription factor activity, binding; CONTAINS InterPro DOMAIN/s: RNA polymerase I specific transcription initiation factor RRN3 (InterPro:IPR007991), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RNA polymerase I specific transcription initiation factor RRN3 protein (TAIR:AT2G34750.1); Has 362 Blast hits to 352 proteins in 169 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 131; Plants - 65; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:16384786..16387827 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64306.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||
| Length | 573 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGAEEVETAD LSDKALVSAI REVLASAQSG DTDQYNELVQ LMYIKKKKSG DDAMAQPEVP DDVDVVAQRE TLLKILSHSV ACLDDVHHNH LLQLILGTRI 101: WDHKPNVIYA LLDLIISLAT TSGKHLSSCL DTLVSNLRSQ PRKLDNKMLE VLSRVHAALH KISYLVPLAP SILLPILAQS MPSVHDKARL QVVVPYVKNL 201: LKLENSSIIG KVVGKDILMM VMGRFRDLDS EIECDDNLQN DSSLAMFDME LDVAVEGTLV SKLLDDLMVE SFNHLKSCQD AGRLDEVFEN LFESFENLIL 301: NTQKLKFSQF LMFYACSLDP ENCGVKFASK LLEKFLSSNN NQVTRTNAVT YLASYLARAN FLSASFVASM LKRLVDECAD YCRTCNDDAR PEVHQVFYSG 401: CQAILYVLCF RMRSILEVPH FQSQLTPLES VLSHKLDPLR VCLSSVVSEF LIQAKACGLF IVSDAFIFDD LSESELSRAL GGFFPFPWLL EKSNSLISPH 501: FIKRSEVKKT YEQAEVTVYG DTDNEEDSDD DVDPDNEMNK MSITPKHSVM HETERLLKMP SRISPSTSPR ESL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)