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AT2G35460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.937
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 2 (TAIR:AT3G11650.1); Has 974 Blast hits to 974 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 974; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXCVeggNOG:ENOG410YGQVEMBL:AC005314EMBL:CP002685EnsemblPlants:AT2G35460EnsemblPlants:AT2G35460.1entrez:818111
GeneID:818111GO:GO:0016021Gramene:AT2G35460.1hmmpanther:PTHR31415hmmpanther:PTHR31415:SF4HOGENOM:HOG000238502InterPro:IPR004864
KEGG:ath:AT2G35460OMA:FHPTKCHPfam:PF03168PhylomeDB:O82294PIR:H84768Proteomes:UP000006548RefSeq:NP_181089.1
TAIR:AT2G35460TMHMM:TMhelixUniGene:At.66314UniProt:O82294
Coordinates (TAIR10) chr2:+:14905788..14906504
Molecular Weight (calculated) 26826.60 Da
IEP (calculated) 9.73
GRAVY (calculated) -0.10
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MANGLNGASY GPPIKPPVKT YYSHGRRGSD VGCGICGCFS SCLLCCGGCL VNIICNILIG VLVCLGVVAL ILWFILRPNV VKFQVTEADL TRFEFDPRSH
101: NLHYNISLNF SIRNPNQRLG IHYDQLEVRG YYGDQRFSAA NMTSFYQGHK NTTVVGTELN GQKLVLLGAG GRRDFREDRR SGVYRIDVKL RFKLRFKFGF
201: LNSWAVRPKI KCHLKVPLST SSSDERFQFH PTKCHVDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)