AT2G34930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : disease resistance family protein / LRR family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
disease resistance family protein / LRR family protein; INVOLVED IN: signal transduction, defense response to fungus, defense response; LOCATED IN: cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT4G20140.1); Has 135121 Blast hits to 32840 proteins in 1181 species: Archae - 56; Bacteria - 8201; Metazoa - 34800; Fungi - 1569; Plants - 79859; Viruses - 2; Other Eukaryotes - 10634 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:14737169..14739886 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100288.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.83 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 905 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLKLRPSFF ISFLILILLL KNLNYGSAAS PKCISTERQA LLTFRAALTD LSSRLFSWSG PDCCNWPGVL CDARTSHVVK IDLRNPSQDV RSDEYKRGSL 101: RGKIHPSLTQ LKFLSYLDLS SNDFNELEIP EFIGQIVSLR YLNLSSSSFS GEIPTSLGNL SKLESLDLYA ESFGDSGTLS LRASNLRWLS SLSSSLKYLN 201: MGYVNLSGAG ETWLQDFSRI SALKELHLFN SELKNLPPTL SSSADLKLLE VLDLSENSLN SPIPNWLFGL TNLRKLFLRW DFLQGSIPTG FKNLKLLETL 301: DLSNNLALQG EIPSVLGDLP QLKFLDLSAN ELNGQIHGFL DAFSRNKGNS LVFLDLSSNK LAGTLPESLG SLRNLQTLDL SSNSFTGSVP SSIGNMASLK 401: KLDLSNNAMN GTIAESLGQL AELVDLNLMA NTWGGVLQKS HFVNLRSLKS IRLTTEPYRS LVFKLPSTWI PPFRLELIQI ENCRIGLFPM WLQVQTKLNF 501: VTLRNTGIED TIPDSWFSGI SSKVTYLILA NNRIKGRLPQ KLAFPKLNTI DLSSNNFEGT FPLWSTNATE LRLYENNFSG SLPQNIDVLM PRMEKIYLFS 601: NSFTGNIPSS LCEVSGLQIL SLRKNHFSGS FPKCWHRQFM LWGIDVSENN LSGEIPESLG MLPSLSVLLL NQNSLEGKIP ESLRNCSGLT NIDLGGNKLT 701: GKLPSWVGKL SSLFMLRLQS NSFTGQIPDD LCNVPNLRIL DLSGNKISGP IPKCISNLTA IARGTNNEVF QNLVFIVTRA REYEAIANSI NLSGNNISGE 801: IPREILGLLY LRILNLSRNS MAGSIPEKIS ELSRLETLDL SKNKFSGAIP QSFAAISSLQ RLNLSFNKLE GSIPKLLKFQ DPSIYIGNEL LCGKPLPKKC 901: PKDIK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)