AT2G32310.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : CCT motif family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||
| Computational Description (TAIR10) |
CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT3G21880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:13724710..13726207 | ||||||||||||||||||||
| Molecular Weight (calculated) | 36910.00 Da | ||||||||||||||||||||
| IEP (calculated) | 4.80 | ||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||
| Length | 325 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNDDWDWEGF YDEIEDFLKI FGEPETPALL GDAETTLPLN INPRPEPVPS QFQYQPPPPQ LPLSSSLHAI QDLDQSRQFG YNEPNVSLCE TSNRTAQFQR 101: GHFHYQELNT PFATESLNSL LASTEANQNL YTVPPHNFGY GEPIGSLYET SNRTYQLQRG HSHYQELYTP SVEFQTLFPL PPLNINFNEP GGGGSSIAAD 201: SSQQQFSSNL PMWHENQLNI GSFDSGPSSS TVVSSSSSSS SSSSENQQDH HEQVVPPNEL DPLTIQRNQY REEAKQRYFE KKRSRKFVKA HRYESRAQTA 301: AKKKRSRGRF VKNDDEFDND PPAIQ |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)