AT2G29860.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.686 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G29830.1); Has 1919 Blast hits to 1720 proteins in 129 species: Archae - 12; Bacteria - 144; Metazoa - 847; Fungi - 2; Plants - 853; Viruses - 6; Other Eukaryotes - 55 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:12737666..12738388 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 27328.00 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.11 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||
Length | 240 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVLLSEIPGG SNGDDPNMNP QELPEELIES IVAPIPRCYY PSLSLLSRAF RHVITSQQLF VTRSGLGFKE PVLYAFIGCT PYTTPRWFIL RRSNIPLQLR 101: RLNSLPHMFP GAAVVTIGYK IYVMGGYNYQ PVSTVIIIDC RFHTWHYLQD MQRARYHATP GVIDGRIYVI GGRKKQDADW VEVFDVTTES WETVPTQCPN 201: EASENGLFVT YAVMQGRILG VFLLTNQDKV YGSHWELYVS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)