AT2G29600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.902 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G29800.1); Has 4356 Blast hits to 3580 proteins in 258 species: Archae - 10; Bacteria - 283; Metazoa - 2658; Fungi - 12; Plants - 1130; Viruses - 133; Other Eukaryotes - 130 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12655661..12656908 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47494.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.48 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||
| Length | 415 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASISETSDD GSNGGDPNQK PEEPHKNPQE GKEEENQNEK PKEDDHQEEE VENVPQIPPQ MPLELIVSTI ATLRRCHYPT LSLLSDSFRQ VISSVDLFQT 101: RSLIGSTEPV LYTLITFTSP NFEEPRWFIL QRRNNTSLQL SLVTSLPPMF PGCTTVTIGH KIYVMGGLRS LNRRAKTVFV IDCRFHTWRY LQEMQVARSY 201: AASAVIDGMI YVVGGSTKRS DDWVEVFNVE TNTWENVPSV LSPYGRSKAP FNVHFVLDNK IYILDGNNRV AYDLRGRRWE DWGPAGNQLG YFWQVLYCVV 301: DNLLYAVVPD HLHVTPIVVY DPREMGWRPV MGVDYLPNLV YSESRMTNFG GKLMILGCYQ SQARFDYYGE VNVWCVEVAL ERREDGEIWG KVQSLSLVNK 401: FRKSPVFVLS RTVTV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)