AT2G27650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.981 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT2G27630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11792996..11797343 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 127348.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.49 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||
| Length | 1106 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKRTTFLEDA ERVKLYNDAR ALFANGDHIK ALEIIEDIIL VHKEDEKSWI LHSEQGEMFN DLAGKAENPY VDFTYMLGSV GCYSKDVLLS RPWAHGLHYL 0101: AQESGSVMYY KKCVNVAKQG LSVTFPDASE SFAQLLLENL KNDMKENLET LIKDAESNIA DSKTVELKGL LQQDFEPEVL ESKKRPELVK NEFKGLRSFW 0201: LGLDVNVKRD FMKVSIAKLI GFVKGVHHRP GRDALKQILD SAKEDRKWTF WMCRTKCSKK FSSAEECKNH LEKEHAADYK PFSEMDMAKR IGKDWTRKIS 0301: LGSWEPVDIA AAVEMIKNRL PEVKAFSYKN GWSKEWPLAE DEERSKLLKE IKFFLVMFCD LKILPCSIRD WMKRYSVTHL KNLNVSEQSL VDSHLVDTPQ 0401: SICFLECHKL SYILNLLKRI KCERDDGTNL VRRAVDSILD STRSKEKIDF DPQFSFLLLD RRLLKSNNGP FVDEGEINVF DPNVHYAKAH AQGDDIVSWL 0501: TDYNSVEKTF PRPIREHNLD IWVAVLRAVQ FTCRTFGTKY AKKVQLFDYL AAIVAAEKLC KSEYERRRKL KEDQWNSYAS LLCDKCEECF SRKNFLKRKL 0601: FLSVVRDILE EASDLTFDLP DIEGCMNLIR EHKSLNDDIV LKSLICLNSV VIFKILLIDS KILLVDNSRI SLLNNLTRLS LFDNRTYILQ LLKPFLLNEI 0701: VNMESKAKSD AAVADLLLEE EKKNPKPSPI QSKKKKNTSK KRNSTSMSSP LSKPGEHLEP ETTSPTVEED SMELGDTVNQ EEVMKNMLGE DSQSEHLESA 0801: LSEASARYNS ALDMTLKALL NIKILKEDLM HNMQPLQHHL EDQVPSVLQN FFTAFVSEEI KTEGVYSYLL SDLLALLEEV LSMSSGAAEV LVAILEFWHC 0901: WKNAERESLV TRLFTLEEKE RMSCRKCRKK PNYPEQSSYG IVMAADSIRD LKCALGNIEF VDILKVIRMD YTMLCDIKNG GCGIANFIHH IISKCPPIFT 1001: IVLEWEKSET EKEISETTKA FEWEIDISRL YAGLEPKTNY RLASMVGCDE KQEHICIAYE KNRWVNLRRD ALAGEDVGNW KSVVRFCGER KVRPEILFYE 1101: VVRSMA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)