AT2G18590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.925 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G36790.1); Has 11209 Blast hits to 11205 proteins in 1815 species: Archae - 227; Bacteria - 8747; Metazoa - 494; Fungi - 517; Plants - 346; Viruses - 3; Other Eukaryotes - 875 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8069988..8072866 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51876.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.37 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.46 | ||||||||||||||||||||||||||||||||
| Length | 473 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKMKSGTIYG ISISLIIINL ATMMQRADEK LIPSTAKELK EAFHAKLSDI GLLSFIRNIV QGLASPLAGL FAISYDRPTV FAFGSFFWVS STVATGVSRY 101: FIQVTLGVAF NGVGHAIVYP VLQSIIADSF KESSRGFGFG LWNLIGTVGG IGGTVVPTVM AGHDFFGISG WRCAFILSAT LSTIVGILVF FFVSDPREKK 201: TSSVIVHHDD QHERDENNGG TMMESPSSSV WKESWVAIKD VTKLRTFQII VLQGIVGSVP WNAMLFWTMW FELIGFDHNQ AALLNGIFAT GQAIGSLVGG 301: IIADKMSRVF PNSGRLICAQ FSVFMGAMFS IVLLRMIPQS VNSFYIFLVT LFLMGLTITW CGPAINSPIL AEIVPAKHRT MVYAFDRALE VTFSSFGAPL 401: VGIMSEKLFG FDAKGIDHVN DSGREAEALG KGIMWMMALP FGLCCLCYTP LHFLFRKDRK IDRTTSSREV EMA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)