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AT2G17470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.577
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Aluminium activated malate transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aluminium activated malate transporter family protein; INVOLVED IN: response to aluminum ion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: Aluminium activated malate transporter family protein (TAIR:AT1G25480.1); Has 1009 Blast hits to 1007 proteins in 362 species: Archae - 0; Bacteria - 626; Metazoa - 0; Fungi - 24; Plants - 336; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR8VeggNOG:KOG4711EMBL:AC007584EMBL:CP002685
EnsemblPlants:AT2G17470EnsemblPlants:AT2G17470.1entrez:816253GeneID:816253
Genevisible:Q9SHM1GO:GO:0005774GO:GO:0009705GO:GO:0015140
GO:GO:0016021GO:GO:0071423Gramene:AT2G17470.1hmmpanther:PTHR31086
hmmpanther:PTHR31086:SF20HOGENOM:HOG000237662InParanoid:Q9SHM1InterPro:IPR020966
KEGG:ath:AT2G17470ncoils:CoilOMA:IWESTESPaxDb:Q9SHM1
Pfam:PF11744Pfam:Q9SHM1PhylomeDB:Q9SHM1PIR:E84552
PRIDE:Q9SHM1PRO:PR:Q9SHM1Proteomes:UP000006548RefSeq:NP_179338.1
STRING:3702.AT2G17470.1TAIR:AT2G17470TMHMM:TMhelixUniGene:At.40138
UniProt:Q9SHM1
Coordinates (TAIR10) chr2:-:7584572..7588008
Molecular Weight (calculated) 60699.70 Da
IEP (calculated) 6.44
GRAVY (calculated) -0.07
Length 538 amino acids
Sequence (TAIR10)
(BLAST)
001: MGPFHQQSRE RLLSQNEYSD MCFRKITNLC ELGHSDRRRI FFAVKMGMAL ALCSVVIFLK EPLHDASKYS VWGILTVVVV FEYSVGATLV KGFNRAIGTV
101: SAGGLALGIA RLSVLSRDFE QTIIITCIFL AGFIASYSKL HPAMKPYEYA FRVFLLTFCI VLVSGNNTGD FFSTAYYRFL FIVVGATTCL VVNIFIFPIW
201: AGEDLHKLVA NNFKSVANSL EGCVNGYLQC VEYERVPSKI LTYQTSDDPL YSGYRSAIQS TNQEESLLDF AIWEPPHGPY RTFNHPWKNY VKLSGAVRHC
301: AFTVMAIHGC ILSEIQAAPE KRQAFRHELQ RVGNEGAKVL RLIGEKVEKM ENLGPGEILN DVQRAAEELQ MKIDSKSYLL VNSESWAATK EKAEAEEYEE
401: EAHETKVIKS LSQIWDTNSS SNNQNPASGN DESQIWESTE SMMLRNRETW PSVSFIGGSV VNETVYKVYE SASSLSLATF ASLLIEFVAR LENLVNAFEE
501: LSTKADFRDP VPLNVVDQEG LWTTLMRLRR LRRYFGRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)