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AT2G03840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.929
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetraspanin13
Curator
Summary (TAIR10)
Member of TETRASPANIN family
Computational
Description (TAIR10)
tetraspanin13 (TET13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: integral to membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: tetraspanin8 (TAIR:AT2G23810.1); Has 414 Blast hits to 412 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 414; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW94eggNOG:ENOG411055EEMBL:AC007196EMBL:CP002685EnsemblPlants:AT2G03840EnsemblPlants:AT2G03840.1entrez:814910
GeneID:814910Genevisible:Q9SI56GO:GO:0016021GO:GO:0048527GO:GO:0080022Gramene:AT2G03840.1hmmpanther:PTHR32191
hmmpanther:PTHR32191:SF2HOGENOM:HOG000153473InParanoid:Q9SI56InterPro:IPR018499KEGG:ath:AT2G03840OMA:RCLVKDNPaxDb:Q9SI56
Pfam:PF00335Pfam:Q9SI56PhylomeDB:Q9SI56PIR:H84452PRO:PR:Q9SI56Proteomes:UP000006548RefSeq:NP_178478.1
STRING:3702.AT2G03840.1TAIR:AT2G03840tair10-symbols:TET13TMHMM:TMhelixUniGene:At.52625UniProt:Q9SI56
Coordinates (TAIR10) chr2:+:1173170..1174115
Molecular Weight (calculated) 32608.40 Da
IEP (calculated) 8.15
GRAVY (calculated) 0.07
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MARDKEDQNN ENPSIVQNMS FPFNTIFLIS SAIFLVTAAF WFVAVMTLHY RTDECNRFVT TPGIFISFSL LAMSLTGFYA AYFKSDCLFR IHFFIFFLWM
101: FVVVSKAIFV IFLHKETNPR LFPGTKIYEF RYEDYSGWVS RLVIKDDEWY RTRRCLVKDN VCNRLNHKMP ASEFYQMNLT PIQSGCCKPP LSCGLNYEKP
201: NNWTVSRYYN NLEVDCKRWN NSADTLCFDC DSCKAVIIAD VHNTSFSITV NIIHIIFSLC IGMTGWFAWL RILRESQK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)