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AT2G02650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.966
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT3G09510.1); Has 1375 Blast hits to 1363 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1371; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y65VeggNOG:KOG1075EMBL:AC004136EMBL:CP002685
EnsemblPlants:AT2G02650EnsemblPlants:AT2G02650.1entrez:814794GeneID:814794
GO:GO:0003676GO:GO:0003964Gramene:AT2G02650.1hmmpanther:PTHR33033
hmmpanther:PTHR33033:SF14InterPro:IPR012337InterPro:IPR026960KEGG:ath:AT2G02650
OMA:VWRSANIPfam:PF13456Pfam:PF13966PhylomeDB:O64712
PIR:T00599Proteomes:UP000006548RefSeq:NP_178368.1STRING:3702.AT2G02650.1
SUPFAM:SSF53098TAIR:AT2G02650UniGene:At.52605UniProt:O64712
Coordinates (TAIR10) chr2:+:735411..736546
Molecular Weight (calculated) 42166.90 Da
IEP (calculated) 7.91
GRAVY (calculated) -0.44
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKRILRSGY WVATHEDLLE EEAIQPPPGS TEVKQAIWKL HVAPKIKHFL WRCVTGALAT NTRLRSRNID ADPICQRCCI EEETIHHIMF NCPYTQSVWR
101: SANIIIGNQW GPPSSFEDNL NRLIQLSKTQ TTNSLDRFLP FWIMWRLWKS RNVFLFQQKC QSPDYEARKG IQDATEWLNA NETTENTNVH VATNPIQTSR
201: RDSSQWNPPP EGWVKCNFDS GYTQGSPYTR SGWTIRECNG HIVLCGNAKL QSSTCSLHAE ALGFLHALQV IWAHGLRYVW FESDSKSLVT LINNGEDHSL
301: LGTLIYDIRH WMLKLPYCSL EFVNRERNSA ADALASHVHA RDPLFQSYTT PPSWLVNTLY YPYTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)