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AT1G77860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Rhomboid-related intramembrane serine protease family protein
Curator
Summary (TAIR10)
mutant has Altered morphology of pollen exine wall; Seven-Path Transmembrane Protein
Computational
Description (TAIR10)
KOMPEITO (KOM); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 1 (TAIR:AT2G29050.1); Has 4976 Blast hits to 4975 proteins in 1564 species: Archae - 94; Bacteria - 3058; Metazoa - 485; Fungi - 120; Plants - 306; Viruses - 0; Other Eukaryotes - 913 (source: NCBI BLink).
Protein Annotations
EC:3.4.21.-eggNOG:COG0705eggNOG:KOG2289EMBL:AB257405
EMBL:AC009243EMBL:CP002684EMBL:DQ446440EnsemblPlants:AT1G77860
EnsemblPlants:AT1G77860.1entrez:844122Gene3D:1.20.1540.10GeneID:844122
Genevisible:F4I8K2GO:GO:0000139GO:GO:0004252GO:GO:0016021
GO:GO:0016485Gramene:AT1G77860.1hmmpanther:PTHR22936hmmpanther:PTHR22936:SF39
InParanoid:F4I8K2InterPro:IPR002610InterPro:IPR022764KEGG:ath:AT1G77860
OMA:MIVNDCWPANTHER:PTHR22936PaxDb:F4I8K2Pfam:PF01694
PhylomeDB:F4I8K2PRIDE:F4I8K2PRO:PR:F4I8K2ProteinModelPortal:F4I8K2
Proteomes:UP000006548RefSeq:NP_177909.2SMR:F4I8K2STRING:3702.AT1G77860.1
SUPFAM:SSF144091TAIR:AT1G77860tair10-symbols:KOMTMHMM:TMhelix
UniGene:At.52552UniProt:F4I8K2
Coordinates (TAIR10) chr1:-:29282643..29284458
Molecular Weight (calculated) 39317.10 Da
IEP (calculated) 8.71
GRAVY (calculated) 0.33
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVPTESKTT QIDEISHNLS FTTSNAGDSS WDKISFFRHR SRQIKRDTWL VSVFVLLQIV LFAVTMGVND CSGNSHGHCS AKLLGRFSFQ SLSENPMLGP
101: SASTLEHMGG LSWKALTENH EIWRILTSPW LHSGLFHLFI NLGSLIFVGI YMEQQFGPLR IAVIYFLSGI MGSLFAVLFV RNIPSISSGA AFFGLIGAML
201: SALAKNWNLY NSKISALAII FTIFTVNFLI GFLPFIDNFA NIGGFISGFL LGFVLLFKPQ LRQMPPSHKG KLFEDDMNRS TRLKEQFDRP VLRIICLLVF
301: CGILAGVLLA ACWGVNLNRH CHWCRYVDCV PTKKWSCSDM TTSCEVYSSK P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)