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AT1G75920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.904
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: extracellular lipase 4 (TAIR:AT1G75910.1); Has 3181 Blast hits to 3145 proteins in 149 species: Archae - 0; Bacteria - 161; Metazoa - 0; Fungi - 26; Plants - 2987; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G75920EnsemblPlants:AT1G75920.1entrez:843925
Gene3D:3.40.50.1110GeneID:843925GO:GO:0006629GO:GO:0016298
Gramene:AT1G75920.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF184InterPro:IPR001087
InterPro:IPR008265InterPro:IPR013830OMA:NNDIGITPaxDb:F4I0R0
Pfam:PF00657PRIDE:F4I0R0PROSITE:PS01098ProteinModelPortal:F4I0R0
Proteomes:UP000006548RefSeq:NP_565122.1scanprosite:PS01098STRING:3702.AT1G75920.1
SUPFAM:SSF52266TAIR:AT1G75920UniGene:At.15394UniProt:F4I0R0
Coordinates (TAIR10) chr1:+:28505591..28507023
Molecular Weight (calculated) 39257.00 Da
IEP (calculated) 10.06
GRAVY (calculated) 0.04
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVLALFSIY FLSIEAVRNE SFPALLAFGD SMVDTGNNNY LLTLMKGNYW PYGWNFDSKI PTGRFGNGRV FSDVVGIILK SSLQCFFVIS AEGLGIKRIV
101: PAYRKLYIAP SDLKTGVSFA SGGAGVDPVT SKLLRVLSPA DQVKDFKGYK RKLKGVVGRS KAKKIVANSV ILVSEGNNDI GITYAIHDAG MRLMTPKVYT
201: SKLVGWNKKF IKDLYDHGAR KFAVMGVIPL GCLPMSRLIF GGFFVWCNFL ANTISEDYNK KLKSGIKSWR GASDFRGARF VYVDMYNSLM DVINNHRKYG
301: FTHEKNGCCC MLTAIVPCSN PDKYVFYDFA HPSEKAYKTI AKKLVEDIKT GLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)