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AT1G73820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ssu72-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ssu72-like family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II subunit A (InterPro:IPR006811); Has 454 Blast hits to 453 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 149; Plants - 48; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G73820-MONOMEReggNOG:COG5211eggNOG:KOG2424EMBL:AC012679EMBL:AK119020EMBL:BT005558EMBL:CP002684
EnsemblPlants:AT1G73820EnsemblPlants:AT1G73820.1entrez:843718GeneID:843718GO:GO:0004721GO:GO:0005634GO:GO:0006397
GO:GO:0009507Gramene:AT1G73820.1hmmpanther:PTHR20383HOGENOM:HOG000183445InterPro:IPR006811KEGG:ath:AT1G73820KO:K15544
OMA:ITDMINLPANTHER:PTHR20383Pfam:PF04722PhylomeDB:Q9C9T0PIR:F96765Proteomes:UP000006548RefSeq:NP_177523.1
SMR:Q9C9T0STRING:3702.AT1G73820.1TAIR:AT1G73820UniGene:At.34950UniProt:Q9C9T0
Coordinates (TAIR10) chr1:-:27755740..27757158
Molecular Weight (calculated) 22295.60 Da
IEP (calculated) 5.73
GRAVY (calculated) -0.57
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFRYAMVCS SNQNRSMEAH ALLKRQGLDV ASYGTGSHVK LPGPSLREPN VYDFGTPYKQ MFDELRRKDP ELYKRNGILQ MIKRNLSVKL APQRWQDNAG
101: DGVFDVVMTF EEKVFDSVLE DLNNREQSLT KTILVMNLEV KDNHEEAAIG GRLALELCQE IEGNETWEDT IDDIVAGFEK QHRRKLVYSI SFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)