AT1G71680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.567 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transmembrane amino acid transporter family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine histidine transporter 1 (TAIR:AT5G40780.2); Has 4295 Blast hits to 4286 proteins in 279 species: Archae - 3; Bacteria - 60; Metazoa - 1288; Fungi - 708; Plants - 1649; Viruses - 2; Other Eukaryotes - 585 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:26944671..26946731 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49797.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.96 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.52 | ||||||||||||||||||||||||||||||||||||
| Length | 448 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTYTANDEEN KGRSTDNNNH RQMDYNDWLP VTASREAKWY YSAFHNVTAM VGAGVLGLPF AMSQLGWGPG LVAIIMSWAI TFYSLWQMVQ LHEAVPGKRL 101: DRYPELGQEA FGPKLGYWIV MPQQLLVQIA SDIVYNVTGG KSLKKFVELL FPNLEHIRQT YYILGFAALQ LVLSQSPDFN SIKIVSLLAA LMSFLYSMIA 201: SVASIAKGTE HRPSTYGVRG DTVASMVFDA FNGIGTIAFA FAGHSVVLEI QATIPSTPEV PSKKPMWKGV VVAYIIVIIC YLFVAISGYW AFGAHVEDDV 301: LISLERPAWL IAAANFMVFI HVIGSYQVFA MIVFDTIESY LVKTLKFTPS TTLRLVARST YVALICLVAV CIPFFGGLLG FFGGLVFSST SYFLPCIIWL 401: IMKRPKRFSA HWWCSWVAIV TGISIAILAP IGGMRHIILS ARTYKLFS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)