suba logo
AT1G70720.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G23205.1); Has 807 Blast hits to 800 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 807; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXANeggNOG:ENOG410YPKAEMBL:BT025760EMBL:CP002684
EMBL:DQ446418EnsemblPlants:AT1G70720EnsemblPlants:AT1G70720.1entrez:843409
Gene3D:1.20.140.40GeneID:843409GO:GO:0004857Gramene:AT1G70720.1
hmmpanther:PTHR31080hmmpanther:PTHR31080:SF10InterPro:IPR006501KEGG:00040+3.1.1.11
KEGG:00500+3.1.1.11KEGG:ath:AT1G70720OMA:FKDVHEDPfam:PF04043
PhylomeDB:Q1PFE5Proteomes:UP000006548RefSeq:NP_564998.1SMART:SM00856
SUPFAM:SSF101148TAIR:AT1G70720TIGRfam:TIGR01614TIGRFAMs:TIGR01614
UniGene:At.35276UniGene:At.68165unipathway:UPA00545UniProt:Q1PFE5
Coordinates (TAIR10) chr1:+:26666427..26667029
Molecular Weight (calculated) 22409.80 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.10
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTMMRPTLL ILLFSTFLPQ ILTVDPPLLP SNGSDFIRLA CNTTLYPDLC FSTLSSFANS IQNDSNRLAR VAISLTLHNT LHLLSYLQNA YNRDHPTPVL
101: RDCFENLKDA VDGMRGSMKQ MKELVSASGS IESFRFQMSN VKTWLSAALT DEYTCTDGFK DVHEDDSIKD DVCSRVDDVK KLTSNALALV NRYADESIIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)