AT1G66220.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.989 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Subtilase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT1G66210.1); Has 8166 Blast hits to 7068 proteins in 1085 species: Archae - 257; Bacteria - 4971; Metazoa - 68; Fungi - 200; Plants - 1982; Viruses - 0; Other Eukaryotes - 688 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:24670536..24673661 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80797.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.55 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 753 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNSFLIADT SSLVIGLLLI LNGVFISAAK HYGLNKIHIV HLGAKQHDTP ELVTKSHYQI LEPLLGSKEA AKNSLVYNYK HGFSGFAAKL TASQAKNLSA 101: HPEVLRVVPS RVMRLKTTRT FDYLGLLPTS PKSLLHKTKM GSEAIIGVID SGIWPESQSF NDTGLGPIPK RWKGKCLSGN GFDAKKHCNK KLIGAEYLTV 201: GLMEMTDGIY DYPSLGESMS PRDHVGHGTH VAAIAAGSFV ANANYKGLAG GTARGAAPHA RIAMYKVCWR EVGCITADLL KAIDHSIRDG VDVISISIGT 301: DAPASFDIDQ SDIGFGSFHA VMKGIPVVAS AGNEGPNAQT VDNVAPWIIT VAATSLDRSF PIPITLGNNL TILGEGLNTF PEVGFTNLIL SDEMLSRSIE 401: QGKTQGTIVL AFTANDEMIR KANSITNAGC AGIIYAQSVI DPTVCSSVDV PCAVVDYEYG TDILYYMQTT VVPKAKLSPS KTLIGRPIAS RVPRFSCRGP 501: NSVSPAILKP DIAAPGVNVL SAVSGVYKFM SGTSMATPAV SGIVGLLRQT HPHWSPAAIR SALVTTAWKT DPSGEPIFSE GSTRKLADPF DYGGGLINPE 601: KVTHPGLIYD MGIDDYLHYL CSAEYDDDSI SKLLGKTYNC TSPKPSMLDF NLPSITIPSL TGEVTVTRTV RNVGPARSVY RPVIESPLGI ELDVKPKTLV 701: FGSNITKITF SVRVKSSHRV NTDFYFGSLC WTDGVHNVTI PVSVRTKFMR NYV |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)