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AT1G61410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA double-strand break repair and VJ recombination XRCC4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA double-strand break repair and VJ recombination XRCC4; FUNCTIONS IN: DNA binding; INVOLVED IN: double-strand break repair, DNA recombination; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA double-strand break repair and VJ recombination XRCC4, C-terminal (InterPro:IPR014751), DNA double-strand break repair and VJ recombination XRCC4 (InterPro:IPR010585); BEST Arabidopsis thaliana protein match is: homolog of human DNA ligase iv-binding protein XRCC4 (TAIR:AT3G23100.2); Has 116 Blast hits to 116 proteins in 57 species: Archae - 0; Bacteria - 60; Metazoa - 15; Fungi - 3; Plants - 33; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFUBeggNOG:ENOG4111X3VEMBL:BT029253EMBL:CP002684EnsemblPlants:AT1G61410EnsemblPlants:AT1G61410.1entrez:842435
Gene3D:1.20.5.370GeneID:842435GO:GO:0003677GO:GO:0005634GO:GO:0006302GO:GO:0006310Gramene:AT1G61410.1
hmmpanther:PTHR28559InterPro:IPR010585InterPro:IPR014751KEGG:ath:AT1G61410OMA:EAGHSTDPfam:PF06632PhylomeDB:Q058G5
Proteomes:UP000006548RefSeq:NP_564776.1SMR:Q058G5STRING:3702.AT1G61410.1SUPFAM:SSF58022TAIR:AT1G61410UniGene:At.36458
UniProt:Q058G5
Coordinates (TAIR10) chr1:-:22658708..22659064
Molecular Weight (calculated) 13221.20 Da
IEP (calculated) 5.15
GRAVY (calculated) -1.11
Length 118 amino acids
Sequence (TAIR10)
(BLAST)
001: MEANIRLSEE VVNKTRSFEK MKSEAERCLA QGEKLCDEKT EFENATYAKF LSVLNAKKAK LRAVRDKEDS VRAVEEEEST YKAESFESGR SDDEQSGEEA
101: SEKATSSKAR GGKRAARS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)