AT1G55440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55420.1); Has 43347 Blast hits to 2039 proteins in 253 species: Archae - 3; Bacteria - 39564; Metazoa - 1002; Fungi - 333; Plants - 1460; Viruses - 54; Other Eukaryotes - 931 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20701499..20703460 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73846.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||
| Length | 653 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVYSRTKPPC RVSDPAQPHN LCRRRRPSPL SICFTCKGKN LTCRKYYYYC ATCNLEFHRG CHLFPPNLRH PFHSSHPLTL ISSNTRNGWW DGSSGSEGST 101: DDDDSDDDDR DGDGDGDGDG SVDIDGDDDA YGSVDIDGDA DADVNVDASL SDGNHRSCRC CNKPLDKTYY HCSICKFNLN LPCSMMLPLL TISHMKSHEH 201: TLTLFCTRLP MSCDACGLSL STRSTLLYTC LPCSHTVHIK CIYLPRVIQI TRHTHRLSFT LSLQPGDFSC GVCRKTVDVN YGQYSCIKGC HYAVHSHCAT 301: RNDVWDGEDL EGVPEEPDED IEPFVRIDVE TIHHFSHEHY LKLQEKKTIC EKDKYCVACT IPIIISRRFY GCMECDFVLD EACASLPRKK YLPIHKHPLT 401: LHPFPIGGIS RFDFNTVAAK DIFKCKACYR LSCGFVYKCG EEYCEFQIDV RCASLPDPLI HGCHPHDLFF NLTHGYCIGC RPRTDLTKAR MLSSHGPGLC 501: SSYAVECIKC DDSFLGMTCA SFPCEAYYKH DRHLLTLCYG DEKDTTSGQY WCEICESELN ADDWFYTCDS CMITLHIDCL LGKDMYMKPG HIFEIGDDGD 601: EVEIVHNDGN SRLICSECNL HCAQAWAFKM IRGYKWYCTL NCMGKGLGLG RLN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)