AT1G47620.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.867 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : cytochrome P450, family 96, subfamily A, polypeptide 8 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of CYP96A | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 96, subfamily A, polypeptide 8 (CYP96A8); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: synergid; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 96, subfamily A, polypeptide 2 (TAIR:AT4G32170.1); Has 27660 Blast hits to 27583 proteins in 1440 species: Archae - 44; Bacteria - 2337; Metazoa - 10474; Fungi - 6077; Plants - 7667; Viruses - 3; Other Eukaryotes - 1058 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:17508116..17509678 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59736.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.80 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 520 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASIGLYEAF IGFLCFLISF YFLVKKPFSY LLIKKTLQSY PWNWPVLGML PGVLLRLQRI YDCSVEVLEN SNMTFQFKGP WFVGMDVLAT VDPANIHHIM 101: SSNFSNYIKG PIFHEIFEAF GDGIINTDAE LWRDWRNASQ LIFNHQRYQN FSASTTKTKV NDGLVPLFNH FANEEIVVDL EDVFQRFMYD ITFIFITGTD 201: PRSLSIEMPE VEFSKALDDV GDAIVHRHIT PRFVWKLQKW IGIGTEKKML KAHATFDRVC EKIIAAKREE LGSQGITYNS NGEREDLLTS FIKLDATKYE 301: VLKPSHDKFL RDFTIGFMAA GRDSTASTLT WFFWNLSKNP NVLTKILQEI NTNLPRTGSD QDMSSYLNKL VYLHGALSES MRLYPPIPFQ RKSPIKEDVL 401: PSGHKVKSNI NIMIFIYAMG RMKTIWGEDA MEFKPERWIS ETGGVRHEPS YKFLSFNAGP RTCLGKNLAM NLMKTVIVEI LQNYEIKIVS GQKIEPKPGL 501: ILHMKHGLKV TMTKKCSSLE |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)