AT1G43020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF547 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G21060.1); Has 538 Blast hits to 520 proteins in 64 species: Archae - 4; Bacteria - 30; Metazoa - 26; Fungi - 0; Plants - 451; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:16155417..16157773 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50295.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.89 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||
| Length | 445 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSKKYRYSS SSSFSSSSSS QLSTPRALQN GYSQAIAKSP LWDVEEVKCS FSSSVSKWNE ELIGEIAELD TEILQLERYL LSLYRSSFGD HLPDNSSLPP 101: CTTKFHNDQA SSVSDKSVLS RLKQFSKTDK IKGSDSGHPS LADLLGLNTL SPNKLSEEIL RSICVIHYKL SDNGHNRLVK NSKNEEYGQE LGVGIHKLYL 201: DDYNLKSVES MLQNFRSLVQ KLEKVDPARL GREEKLAFWI NIHNALVMHE YIVYGIGEDT TSTLMNLKAA FNIGGEWVNA YDIQSSILGI RPCHSPSRLR 301: TLFSPAKSSK TSSGRHTYAL DYAEPLLHFA LSTGASTDPM VRVYTSEGIF QELRQARDSY IQTSVGFEKE TKILLPKIIY NYAKDTSLDM GELFSTVSEC 401: LMESQRTAMR RIVNKKQERC IRWVHDESKF RYVIHSELVR GSLEI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)