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AT1G34310.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : auxin response factor 12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
auxin response factor 12 (ARF12); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: auxin response factor 15 (TAIR:AT1G35520.1); Has 2491 Blast hits to 2142 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2489; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:25563EMBL:AC007454EMBL:AY669792EMBL:CP002684
EnsemblPlants:AT1G34310EnsemblPlants:AT1G34310.1entrez:840331ExpressionAtlas:Q9XID4
Gene3D:2.40.330.10GeneID:840331Genevisible:Q9XID4GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009734
Gramene:AT1G34310.1hmmpanther:PTHR31384hmmpanther:PTHR31384:SF1HOGENOM:HOG000241141
IntAct:Q9XID4InterPro:IPR000270InterPro:IPR003340InterPro:IPR010525
InterPro:IPR015300InterPro:IPR033389KEGG:ath:AT1G34310PaxDb:Q9XID4
Pfam:PF02309Pfam:PF02362Pfam:PF06507Pfam:Q9XID4
Pfscan:PS50863Pfscan:PS51745PhylomeDB:Q9XID4PIR:C86467
PRIDE:Q9XID4PRO:PR:Q9XID4PROSITE:PS50863PROSITE:PS51745
ProteinModelPortal:Q9XID4Proteomes:UP000006548RefSeq:NP_174691.2SMART:SM01019
SMR:Q9XID4STRING:3702.AT1G34310.1SUPFAM:SSF101936SUPFAM:SSF54277
TAIR:AT1G34310tair10-symbols:ARF12UniGene:At.51185UniProt:C0SUZ1
UniProt:Q9XID4
Coordinates (TAIR10) chr1:-:12508548..12511520
Molecular Weight (calculated) 67221.40 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.40
Length 593 amino acids
Sequence (TAIR10)
(BLAST)
001: MESGNVVNAQ PELSGIIDGS KSYVYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVETS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSAHGG FFVPKKHAIE CLPSLDMSQP LPAQELLAID LHGNQWRFNH NYRGTPQRHL LTTGWNAFTT
201: SKKLVAGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVVA SAKHAFDNQC MFTVVYKPRS SKFIVSYDKF LDAVNNKFNV GSRFTMRLEG
301: DDFSERRCFG TIIGVSDFSP HWKCSEWRSL EVQWDEFTSF PGPKKVSPWD IEHLMPAINV PRSFLLKNKR LREVNEIGSS SSHLLPPILT QGQENEQLSV
401: ASPMNISLRY RDATEDAMNP SKLLMSYPVQ PMPKLNYNNQ MVTEMEENIT TKTGTNFRLF GVTLDTPPVI KDPIEEIGSE ISKLTEGKKF GLSQTLRSPT
501: EIQNKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWEI AFTDSDEDKM LVGDDPWPEF CNMVKKIFIQ KRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)