AT1G32850.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.932 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : ubiquitin-specific protease 11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
ubiquitin-specific protease 11 (UBP11); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin-specific peptidase, DUSP domain (InterPro:IPR006615), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 10 (TAIR:AT4G10590.1); Has 11311 Blast hits to 7509 proteins in 254 species: Archae - 0; Bacteria - 6; Metazoa - 5825; Fungi - 2000; Plants - 1417; Viruses - 8; Other Eukaryotes - 2055 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:11902629..11906900 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 101181.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.44 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 892 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTLITDSESI GVCESSYTPE EERRIVTELN NEAEADLKEG NLYFVISNRW YTRWQRFVGL LTEEFRSGEP SEVTRPGPID NHDIIDSESD ASDPQLRMML 101: EEGVDYTLVQ QEVWRKLVKW YKGGPPVPRK LISQGFYTKS FSVEVYLLCL TLTDSRDEST TIIRLSKQAS IGQLYEMVCA GKGVAKEKAR IWDYFEKKKS 201: VLLDPSSEQS VEEAGLQFNQ DILLEVDGSA SSQFVMSLAE NELAMVPLEP MRSDAMDIVR GGGTLSNGHS NGFKFSFFGR NTFKDDVSSR TFGKGEKRGL 301: GGLQNLGNTC FMNSTLQCLA HTPPIVEYFL QDYRSDINAK NPLGMRGELA IAFGELLRKL WSSGQNTVAP RAFKTKLARF APQFSGYNQH DSQEMLAFLL 401: DGLHEDLNKV KRKPYIEAKD SDGRPDDEVA EEKWKYHKAR NDSVIVDVFQ GQYKSTLVCP DCGKISITFD PFMYLSLPLP SSRTRSMTVT VFYGDGSHLP 501: MPYTVTVPKD GSCRDLSNAL GTACCLDNDE SLLLAEVYDH KVFKYYENPR ELLNGIKDNE HIVAYRFKQM HKGPGKVKLE ILHGEQEKSS DRGPKCFGTP 601: LVTYINKEPL SGTDIATSIS GLLSPLRRVH MSCVVNSGNE NGHVPDESSR SILSRDTETE DNDRELSLSL LRDYYSFNLQ PLESDSVVNP GSVTKVLVKW 701: NEKEHEKYDS SYLNDLPKVH KNVLAKKTMQ EGISLFSCLE AFLAEEPLGP DDMWYCPGCK EHRQANKKLD LWKLPDILVF HLKRFTYSRY FKNKIDTLVN 801: FHIHDLDLSK YVKNEDGQSY LYELYAISNH YGGLGGGHYT AYAKLMDETK WYNFDDSRVS AVNESEIKTS AAYVLFYQRV KSDSETSDMK MD |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)