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AT1G29570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G29560.1); Has 39749 Blast hits to 19330 proteins in 1306 species: Archae - 56; Bacteria - 4885; Metazoa - 16078; Fungi - 3100; Plants - 2094; Viruses - 196; Other Eukaryotes - 13340 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5063eggNOG:KOG1677EMBL:AC068667EMBL:CP002684
EnsemblPlants:AT1G29570EnsemblPlants:AT1G29570.1entrez:839834GeneID:839834
Genevisible:Q9C7P4GO:GO:0003677GO:GO:0046872Gramene:AT1G29570.1
hmmpanther:PTHR12506HOGENOM:HOG000107458InParanoid:Q9C7P4InterPro:IPR000571
KEGG:ath:AT1G29570ncoils:CoilOMA:HIMDRNVPaxDb:Q9C7P4
Pfam:PF00642Pfam:Q9C7P4Pfscan:PS50103PhylomeDB:Q9C7P4
PIR:G86418PRIDE:Q9C7P4PRO:PR:Q9C7P4PROSITE:PS50103
ProteinModelPortal:Q9C7P4Proteomes:UP000006548RefSeq:NP_174250.1SMART:SM00356
STRING:3702.AT1G29570.1SUPFAM:SSF90229TAIR:AT1G29570UniGene:At.51822
UniProt:Q9C7P4
Coordinates (TAIR10) chr1:+:10335910..10337854
Molecular Weight (calculated) 39647.90 Da
IEP (calculated) 7.05
GRAVY (calculated) -1.79
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MADAGDNQQE AERRSDETES RSIKEPKEKE DEDENPQDQI QSKERMRQSS PYPVRPGKKD CQFYLKNGLC RYRSSCRFNH PTQRPQELPV RICKHIMDRN
101: VAEPMYQDWR ESESERRFDE RTQRTFGDER TQRRYGIEYS GARPEKRSKI VPDFQMRDPR HHDTEWRFER ERMERIERQR REAEENLQEQ RQRDSIERQR
201: REAEENLQEQ RQRDSIERQR REAQENLQQQ RQRDSIERQR REAQENLQQQ RLQDMPENHN VDDQQNLQEQ RRISIEKERT EARLRLEQIR PTVSFPINEF
301: IRAVVLLREL IENWDDKAWK K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)