AT1G29570.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G29560.1); Has 39749 Blast hits to 19330 proteins in 1306 species: Archae - 56; Bacteria - 4885; Metazoa - 16078; Fungi - 3100; Plants - 2094; Viruses - 196; Other Eukaryotes - 13340 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:10335910..10337854 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 39647.90 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.05 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -1.79 | ||||||||||||||||||||||||||||||||||||||||
Length | 321 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MADAGDNQQE AERRSDETES RSIKEPKEKE DEDENPQDQI QSKERMRQSS PYPVRPGKKD CQFYLKNGLC RYRSSCRFNH PTQRPQELPV RICKHIMDRN 101: VAEPMYQDWR ESESERRFDE RTQRTFGDER TQRRYGIEYS GARPEKRSKI VPDFQMRDPR HHDTEWRFER ERMERIERQR REAEENLQEQ RQRDSIERQR 201: REAEENLQEQ RQRDSIERQR REAQENLQQQ RQRDSIERQR REAQENLQQQ RLQDMPENHN VDDQQNLQEQ RRISIEKERT EARLRLEQIR PTVSFPINEF 301: IRAVVLLREL IENWDDKAWK K |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)