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AT1G16820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit A (TAIR:AT1G78900.2); Has 151 Blast hits to 150 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1155eggNOG:KOG1352EMBL:CP002684EnsemblPlants:AT1G16820EnsemblPlants:AT1G16820.1entrez:838253ExpressionAtlas:F4I600
GeneID:838253GO:GO:0005773GO:GO:0005774Gramene:AT1G16820.1hmmpanther:PTHR34892OMA:YLHSHQTPaxDb:F4I600
PRIDE:F4I600ProteinModelPortal:F4I600Proteomes:UP000006548RefSeq:NP_173126.1SMR:F4I600STRING:3702.AT1G16820.1TAIR:AT1G16820
UniGene:At.16055UniGene:At.72370UniProt:F4I600
Coordinates (TAIR10) chr1:-:5757199..5758464
Molecular Weight (calculated) 10444.40 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.35
Length 93 amino acids
Sequence (TAIR10)
(BLAST)
1: MAHISDIKLI RTDTTLDLSQ KAEKGMSCDM DTNYDKFSPS YKSVWMMRNI IHFYNLANQA IDRAAGVDGS DGYLHSHQTS LGRSFLPLSV SEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)