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AT1G15600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.896
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15620.1); Has 227 Blast hits to 227 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSPKeggNOG:ENOG41108MBEMBL:AC013453EMBL:AY924670EMBL:CP002684EMBL:DQ132649EnsemblPlants:AT1G15600
EnsemblPlants:AT1G15600.1entrez:838130GeneID:838130GO:GO:0016021Gramene:AT1G15600.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF116
HOGENOM:HOG000137617KEGG:ath:AT1G15600OMA:LPILCWRPhylomeDB:Q9M9D6PIR:H86289Proteomes:UP000006548RefSeq:NP_173013.1
TAIR:AT1G15600TMHMM:TMhelixUniGene:At.51619UniProt:Q9M9D6
Coordinates (TAIR10) chr1:+:5368923..5369761
Molecular Weight (calculated) 24716.20 Da
IEP (calculated) 4.00
GRAVY (calculated) 0.66
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGPLLSECE HIIDITSDGS SSSIDGQQPH EGVELGDPYT NESICNSIEF VVTLVLIAAV IIVLIEPRDE EHPQTMLSIW IIGYTCGCIA TLPILCWRFW
101: LYNRSVGSES TDEYLRETRI NKDMDFFMTG FFVGWYVVFL WILSSKAFDS SALDDTTTQY FWLCLALLTF SCIRYVLFNL TLAMVCYTTP LLLLTPVVIC
201: VLLAVEVLKG IVACIVSCIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)