AT1G11470.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||
| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||
| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02370.1); Has 31 Blast hits to 31 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
|
||||||||||||||||
| Coordinates (TAIR10) | chr1:-:3859874..3860522 | ||||||||||||||||
| Molecular Weight (calculated) | 16286.40 Da | ||||||||||||||||
| IEP (calculated) | 9.61 | ||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||
| Length | 150 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPFSSSSAE IKIARTAPFS SSAENKGNRQ INGASSSASS CDAENAKSGG SRQLGKAAYM EGKHVDALQI FMWMHRKEMS FSTSEVALFV DIIGNTIGIA 101: AAHSYLKKVD PNCDQMHNRT ENWPAFVSLV KLETKLLKEN GIVHATRPPK |
||||||||||||||||
| See Also |
|
||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)