AT1G10000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribonuclease H-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: Beta-galactosidase related protein (TAIR:AT2G06845.1); Has 585 Blast hits to 585 proteins in 17 species: Archae - 2; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 581; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3263877..3264788 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33340.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.19 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.25 | ||||||||||||||||||||||||||||||||||||
| Length | 303 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPKIKLFLWK AAAGALPVGA QLVRRHISST WDCARCGAPE TSTHMLFHCD FAAQVWNLAP LQLGHIPIGT PILEALNLLK KTIVLPPVGI HTATLFPWIC 101: WHIWKARNQL IFQNSHFSVI ETVTKAVQDA LAWQSAQLAL PKVRVATPRP NSTTTLTHDF LCYVDAAWQQ QSSLAGSGWV FQATSHSEKE ITTFSAGCRR 201: FPSPLAAEAW AIKSAMLHAL QLERSDLLVL SDSKSIVDAL NSNVSLNEIF GLLVEIRSIR NRFRSISFQF IPRLVNSIAD AAAKLSLCIS GNIGLDPGTL 301: VFV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)