AT1G05880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARIADNE 12 (ARI12); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1); Has 1339 Blast hits to 1333 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 646; Fungi - 141; Plants - 293; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:1775655..1778330 | ||||||||||||
| Molecular Weight (calculated) | 55576.20 Da | ||||||||||||
| IEP (calculated) | 4.98 | ||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||
| Length | 489 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDNNSVIGSE VDAEADESYV NAALEDGQTG KKSVQRNYAT VLTEEDIRAL MEIDVQSVSD FTSLSKAEAT LLLSHLRWNV DCICKQWSAG AQSVRDSVGL 101: LELDPPSDDN EYFCGACGES HPHKNLASVS CGHRICTRCW TSHINKIISE KPAAEWNLWL KCPVRVGLHA SCPASVGLDT IERFASKREK FNYNQYLLRS 201: YVDNRETGSR CAIDLSPGSG NASVSCHRLV RFCWNCREDA HSPVDCKTAA KWLLENAVPC PKCKLRIPRN QDNSLKMKCL PCNYVFCWFC HVDWIEDMEG 301: TGGDLHFCTF DAVLSDQRGK MSESDSNRYE DCYENWDSNE LLMQKEQANL PKLDTIIQEL SNTQLENVSQ LKFILEAGLQ IIECRRVLEW TYVYGYYLRE 401: DEVGKQNLLK DTQERLKKFV ENLKHCLETN LQPFRYEEEP SKDFNAFRIK LTELTSLTRN HYENVVKDVE NGLASVVSEG EASGSGRNQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)