AT1G03100.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G17616.1); Has 9904 Blast hits to 5133 proteins in 176 species: Archae - 0; Bacteria - 34; Metazoa - 111; Fungi - 31; Plants - 9502; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:744026..746407 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 89244.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.12 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 793 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MFSLRKTKLQ PVSLHQCRLS SLFRGVLIHA IEVTGTQSQA SLQHGLAGKA VLSNAKYLSV LTRFRTSTRF DVWSIHRREA ISSISGSILL QARDPAKLNE 101: EIQIAVDEHR CDEAWRLFEQ HMQMEGFPRK SVVNNVVVCF AESLDSNWLQ KGYSLVEQAY EEGKQNLLEK EPLLYLSLAL AKSGMAVPAS TILRKLVETE 201: EYPHVSAWSA VLAHMSLAGS GSYLSAELVL EIGYLFHNNR VDPRKKSNAP LLAMKPNTQV LNVALAGCLL FGTTRKAEQL LDMIPKIGVK ADANLLVIMA 301: HIYERNGRRE ELRKLQRHID EACNLNESQF WQFYNCLLMC HLKFGDLESA SKMVLEMLRR GKVARNSLGA AILEFDTADD GRLYTKRVSG KGSEVKEHDN 401: PETRVVSIHS MIPYDEFSRD RKFLKLEAEA KDVLGALLAK LHVQVELITS ERGVLQPTEE IYVKLAKAFL ESGKMKELAK FLLKAEHEDS PVSSDNSMLI 501: NVINACISLG MLDQAHDLLD EMRMAGVRTG SSVYSSLLKA YCNTNQTREV TSLLRDAQKA GIQLDSSCYE ALIQSQVIQN DTHGALNVFK EMKEAKILRG 601: GNQKFEKLLK GCEGNAEAGL MSKLLREIRE VQSLDAGVHD WNNVIHFFSK KGLMQDAEKA LKRMRSLGHS PNAQTFHSMV TGYAAIGSKY TEVTELWGEM 701: KSIAAATSSM KFDQELLDAV LYTFVRGGFF SRANEVVEMM EKKNMFVDKY KYRMLFLKYH KTAYKGKAPK VQSESQLKKR EAGLVFKKWL GLS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)