suba logo
AT1G02540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 3327 Blast hits to 2216 proteins in 265 species: Archae - 18; Bacteria - 202; Metazoa - 802; Fungi - 283; Plants - 84; Viruses - 187; Other Eukaryotes - 1751 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX8TeggNOG:ENOG4110472EMBL:AC022521EMBL:CP002684
EnsemblPlants:AT1G02540EnsemblPlants:AT1G02540.1entrez:839516GeneID:839516
Gramene:AT1G02540.1KEGG:ath:AT1G02540ncoils:CoilPIR:G86155
Proteomes:UP000006548RefSeq:NP_171755.1STRING:3702.AT1G02540.1TAIR:AT1G02540
UniGene:At.21093UniGene:At.65875UniGene:At.68758UniProt:Q9FWX9
Coordinates (TAIR10) chr1:-:534827..535699
Molecular Weight (calculated) 33805.30 Da
IEP (calculated) 3.78
GRAVY (calculated) -1.09
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEYWLASEN DAEFQEVALC NIRMKKNVLD QFKFPTENNN NLVEQPPLHN NMVSGSTMDQ NMEEYADELE NMLDEEQEED DDRAIQQQHP EFPLQSHDSR
101: STLDKHMEEY ADDLEKMLDE EEEGDDDSAI QQQHLEIHLQ LQDHGSRSTT DQNMEEYANE LENILDEEEE EDDDDDRGIQ QQDSQIPLPV QSQDSGNPLV
201: VIMEDERVDQ DMIFDLVKQE EEERKLKTFT EICFAGLKTQ RNLHFQDSYF AGGQEMSPWD NMVTNNNPFG LVFNTHGHEM QEPPVINGVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)