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ATCG00900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S7p/S5e family protein
Curator
Summary (TAIR10)
encodes a chloroplast ribosomal protein S7, a constituent of the small subunit of the ribosomal complex
Computational
Description (TAIR10)
RPS7.1; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid small ribosomal subunit, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, bacterial-type (InterPro:IPR005717), Ribosomal protein S7, conserved site (InterPro:IPR020606), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ribosomal protein S7 (TAIR:ATCG01240.1).
Protein Annotations
eggNOG:COG0049eggNOG:KOG3291EMBL:AF238063EnsemblPlants:ATCG00900
EnsemblPlants:ATCG00900.1EnsemblPlants:ATCG01240.1entrez:4386140entrez:844712
ExpressionAtlas:Q6KGZ1Gene3D:1.10.455.10GeneID:4386140GeneID:844712
GO:GO:0003735GO:GO:0006412GO:GO:0009507GO:GO:0015935
GO:GO:0019843Gramene:ATCG00900.1Gramene:ATCG01240.1HAMAP:MF_00480_B
hmmpanther:PTHR11205hmmpanther:PTHR11205:SF22InterPro:IPR000235InterPro:IPR005717
InterPro:IPR020606InterPro:IPR023798KEGG:ath:ArthCp069KEGG:ath:ArthCp088
KO:K02992OMA:EVHRMADPANTHER:PTHR11205PaxDb:Q6KGZ1
Pfam:P61841Pfam:PF00177PIRSF:PIRSF002122PRIDE:Q6KGZ1
PROSITE:PS00052ProteinModelPortal:Q6KGZ1RefSeq:NP_051104.1RefSeq:NP_051118.1
scanprosite:PS00052SMR:Q6KGZ1STRING:3702.ATCG01240.1SUPFAM:SSF47973
TAIR:ATCG00900TAIR:ATCG01240tair10-symbols:RPS7tair10-symbols:RPS7.1
TIGRfam:TIGR01029TIGRFAMs:TIGR01029UniProt:P61841UniProt:Q6KGZ1
Coordinates (TAIR10) chrC:-:97478..97945
Molecular Weight (calculated) 17358.30 Da
IEP (calculated) 11.85
GRAVY (calculated) -0.58
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRRGTAEEK TAKSDPIYRN RLVNMLVNRI LKHGKKSLAY QIIYRALKKI QQKTETNPLS VLRQAIRGVT PDIAVKARRV GGSTHQVPIE IGSTQGKALA
101: IRWLLGASRK RPGRNMAFKL SSELVDAAKG SGDAIRKKEE THRMAEANRA FAHFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)