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ATCG00830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ribosomal protein L2
Curator
Summary (TAIR10)
encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex
Computational
Description (TAIR10)
ribosomal protein L2 (RPL2.1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid large ribosomal subunit, chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation protein SH3-like, subgroup (InterPro:IPR014722), Ribosomal protein L2 (InterPro:IPR002171), Ribosomal protein L2, bacterial-type (InterPro:IPR005880), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2, conserved site (InterPro:IPR022671); BEST Arabidopsis thaliana protein match is: ribosomal protein L2 (TAIR:ATCG01310.1).
Protein Annotations
BioGrid:29997eggNOG:COG0090eggNOG:KOG0438EMBL:AP000423
EMBL:AY007488EnsemblPlants:ATCG00830EnsemblPlants:ATCG00830.1EnsemblPlants:ATCG01310.1
entrez:1466246entrez:844718Gene3D:2.30.30.30Gene3D:2.40.50.140
Gene3D:4.10.950.10GeneID:1466246GeneID:844718Genevisible:P56791
GO:GO:0003735GO:GO:0006412GO:GO:0009507GO:GO:0015934
GO:GO:0016740GO:GO:0019843Gramene:ATCG00830.1Gramene:ATCG01310.1
HAMAP:MF_01320_Bhmmpanther:PTHR13691hmmpanther:PTHR13691:SF21HOGENOM:HOG000232982
InParanoid:P56791InterPro:IPR002171InterPro:IPR005880InterPro:IPR008991
InterPro:IPR012340InterPro:IPR014722InterPro:IPR014726InterPro:IPR022666
InterPro:IPR022669InterPro:IPR022671KEGG:ath:ArthCp064KEGG:ath:ArthCp085
KO:K02886OMA:HNRGVTMPANTHER:PTHR13691PaxDb:P56791
Pfam:P56791Pfam:PF00181Pfam:PF03947PIRSF:PIRSF002158
PRIDE:P56791PRO:PR:P56791PROSITE:PS00467ProteinModelPortal:P56791
Proteomes:UP000006548RefSeq:NP_051099.1RefSeq:NP_051123.1scanprosite:PS00467
SMART:SM01382SMART:SM01383SMR:P56791STRING:3702.ATCG01310.1
SUPFAM:SSF50104SUPFAM:SSF50249TAIR:ATCG00830TAIR:ATCG01310
tair10-symbols:RPL2.1TIGRfam:TIGR01171TIGRFAMs:TIGR01171UniProt:P56791
Coordinates (TAIR10) chrC:-:84337..85843
Molecular Weight (calculated) 29866.60 Da
IEP (calculated) 11.45
GRAVY (calculated) -0.52
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)