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AT5G67411.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.644
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : GRAS family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT3G49950.1); Has 1527 Blast hits to 1517 proteins in 214 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1525; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB007645EMBL:CP002688EMBL:DQ487622EnsemblPlants:AT5G67411
EnsemblPlants:AT5G67411.1entrez:3771574GeneID:3771574GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT5G67411.1hmmpanther:PTHR31636
hmmpanther:PTHR31636:SF51InterPro:IPR005202KEGG:ath:AT5G67411OMA:TAKMESM
PaxDb:Q2V2T9Pfam:PF03514Pfam:Q2V2T9Pfscan:PS50985
PhylomeDB:Q2V2T9PRIDE:Q2V2T9PROSITE:PS50985ProteinModelPortal:Q2V2T9
Proteomes:UP000006548RefSeq:NP_001032167.1TAIR:AT5G67411UniGene:At.65711
UniProt:Q2V2T9
Coordinates (TAIR10) chr5:-:26898401..26899097
Molecular Weight (calculated) 23288.00 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.18
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIPTLIDSM ANKLHKKPPP LLKLTVIASD AEFHPPPLLG ISYEELGSKL VNFATTRNVA MEFRIISSSY SDGLSSLIEQ LRIDPFVFNE ALVVNCHMML
101: HYIPDEILTS NLRSVFLKEL RDLNPTIVTL IDEDSDFTST NFISRLRSLY NYMWIPYDTA EMFLTRGSEQ RQWYEADISW KIDNVVAKEG AERVERLEPK
201: SR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)