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AT5G61900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30875866 (2019): plasma membrane
  • PMID:30447334 (2019): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Calcium-dependent phospholipid-binding Copine family protein
Curator
Summary (TAIR10)
Encodes a plasma-membrane localized, copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response.
Computational
Description (TAIR10)
BONZAI 1 (BON1); FUNCTIONS IN: calcium-dependent phospholipid binding; INVOLVED IN: in 7 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Copine (InterPro:IPR010734), C2 calcium-dependent membrane targeting (InterPro:IPR000008), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT5G61910.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21555eggNOG:ENOG410XPC8eggNOG:KOG1327EMBL:AB022212
EMBL:AY045764EMBL:AY062824EMBL:AY085339EMBL:BT010555
EMBL:CP002688EnsemblPlants:AT5G61900EnsemblPlants:AT5G61900.1EnsemblPlants:AT5G61900.3
entrez:836311Gene3D:2.60.40.150GeneID:836311Genevisible:Q941L3
GO:GO:0005544GO:GO:0005886GO:GO:0006952GO:GO:0009266
GO:GO:0009270GO:GO:0009506GO:GO:0045793GO:GO:0060548
Gramene:AT5G61900.1Gramene:AT5G61900.3hmmpanther:PTHR10857hmmpanther:PTHR10857:SF26
HOGENOM:HOG000220898InParanoid:Q941L3IntAct:Q941L3InterPro:IPR000008
InterPro:IPR002035InterPro:IPR010734InterPro:IPR031116KEGG:ath:AT5G61900
PANTHER:PTHR10857:SF26PaxDb:Q941L3Pfam:PF00168Pfam:PF07002
Pfam:Q941L3Pfscan:PS50004Pfscan:PS50234PhylomeDB:Q941L3
PRIDE:Q941L3PRO:PR:Q941L3PROSITE:PS50004PROSITE:PS50234
ProteinModelPortal:Q941L3Proteomes:UP000006548Reactome:R-ATH-1483206RefSeq:NP_568944.1
RefSeq:NP_974977.1SMART:SM00239SMART:SM00327SMR:Q941L3
STRING:3702.AT5G61910.4SUPFAM:SSF49562SUPFAM:SSF53300SwissPalm:Q941L3
TAIR:AT5G61900tair10-symbols:BONtair10-symbols:BON1tair10-symbols:CPN1
UniGene:At.20314UniProt:Q941L3
Coordinates (TAIR10) chr5:-:24855908..24859150
Molecular Weight (calculated) 63123.30 Da
IEP (calculated) 5.83
GRAVY (calculated) -0.06
Length 578 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNCCSDVAS GAGATAGVGG SGSSAALGAT NDALDYYLKS KGFNGLFSQI ELSFSASNLR DRDVLSKSDP MVVVYQKEKD ATLSEVFRSE VVLNSLAPKW
101: IKKFIVAYHF ETVQTLVFRV YDVDTKFQNS REEMLKLDEQ QFLGEATCAL SEIITKSTRT STLELKRKDG FAPQAQPHHG KLIIHAEESL ASKISTEIVF
201: RCSNLESKDL FSKSDPFLVV SKIVEHGTPI PVSKTEVRKN DLNPIWKPVF LSVQQVGSKD SPVIIECSDF NSNGKHSLIG KVQKSLSDLE KLHLAGQGIN
301: FSLPTGAGQN KVLKSQLFVD KFTETVHHTF LEYLASGFEL NFMVAIDFTA SNGNPRLPDS LHYIDPSGRL NAYQRAIMDV GEVLQFYDSD KRFPAWGFGA
401: RPIDAPVSHC FNLNGSSSYS EVDGIQGIMT SYTSALFNVS LAGPTLFGPV INAAAMIASA SLAQGSRKYY VLLIITDGVI TDLQETKDAL VSASDLPLSI
501: LIVGVGGADF KEMEILDADK GERLESSSGR LASRDIVQFV ALRDVQYGEI SVVQALLAEL PSQFLTYMRI RNMKPIPP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)