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AT5G57290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 60S acidic ribosomal protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT4G25890.1); Has 1008 Blast hits to 988 proteins in 201 species: Archae - 2; Bacteria - 26; Metazoa - 438; Fungi - 137; Plants - 273; Viruses - 5; Other Eukaryotes - 127 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3GPeggNOG:ENOG41124K7EMBL:AB019233EMBL:AY088631
EMBL:BT025594EMBL:CP002688EnsemblPlants:AT5G57290EnsemblPlants:AT5G57290.1
entrez:835834ExpressionAtlas:Q9LVC9GeneID:835834Genevisible:Q9LVC9
GO:GO:0003735GO:GO:0005634GO:GO:0005829GO:GO:0006414
GO:GO:0022626HAMAP:MF_01478HOGENOM:HOG000064577InParanoid:Q9LVC9
InterPro:IPR027534iPTMnet:Q9LVC9ncoils:CoilOMA:GDEWSAK
PaxDb:Q9LVC9Pfam:PF00428Pfam:Q9LVC9PhylomeDB:Q9LVC9
PRIDE:Q9LVC9PRO:PR:Q9LVC9ProteinModelPortal:Q9LVC9Proteomes:UP000006548
RefSeq:NP_200539.1SMR:Q9LVC9STRING:3702.AT5G57290.1TAIR:AT5G57290
UniGene:At.20208UniGene:At.68067UniProt:Q9LVC9
Coordinates (TAIR10) chr5:-:23207049..23207835
Molecular Weight (calculated) 11863.50 Da
IEP (calculated) 4.16
GRAVY (calculated) -0.21
Length 120 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVFSFVCKS KGGEWTAKQH EGDLEASASS TYDLQRKLVQ TALSADSSGG VQSSFSLVSP TSAVFVVVIG GGGGGGFAAG GGAAAGGGGG GEAAAATKEE
101: EKKKEESEEE EGDFGFDLFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)