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AT5G39930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.485
cytosol 0.200
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : CLP1-similar protein 5
Curator
Summary (TAIR10)
Encodes a protein with similarity to the CLP1 polyadenylation factor.
Computational
Description (TAIR10)
CLP1-similar protein 5 (CLPS5); CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP-similar protein 3 (TAIR:AT3G04680.2); Has 693 Blast hits to 689 proteins in 274 species: Archae - 99; Bacteria - 14; Metazoa - 196; Fungi - 200; Plants - 63; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G39930-MONOMERBioGrid:19241eggNOG:COG5623eggNOG:KOG2749
EMBL:AB010077EMBL:AY954872EMBL:CP002688EnsemblPlants:AT5G39930
EnsemblPlants:AT5G39930.1entrez:833990Gene3D:3.40.50.300GeneID:833990
Genevisible:Q9FLE2GO:GO:0005524GO:GO:0005634GO:GO:0005849
GO:GO:0006378GO:GO:0006379GO:GO:0006388GO:GO:0016310
GO:GO:0051731Gramene:AT5G39930.1HAMAP:MF_03035hmmpanther:PTHR12755
HOGENOM:HOG000231935InParanoid:Q9FLE2IntAct:Q9FLE2InterPro:IPR010655
InterPro:IPR027417InterPro:IPR028606InterPro:IPR032319InterPro:IPR032324
KEGG:ath:AT5G39930KO:K14399OMA:GENQWERPaxDb:Q9FLE2
Pfam:PF06807Pfam:PF16573Pfam:PF16575Pfam:Q9FLE2
PhylomeDB:Q9FLE2PRIDE:Q9FLE2PRO:PR:Q9FLE2ProteinModelPortal:Q9FLE2
Proteomes:UP000006548Reactome:R-ATH-72163RefSeq:NP_198809.2SMR:Q9FLE2
STRING:3702.AT5G39930.1SUPFAM:SSF52540TAIR:AT5G39930tair10-symbols:CLPS5
UniGene:At.55267UniProt:Q9FLE2
Coordinates (TAIR10) chr5:-:15985249..15987240
Molecular Weight (calculated) 47491.50 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.03
Length 424 amino acids
Sequence (TAIR10)
(BLAST)
001: MFGPQIRRVK LEKQSELRIE LQPTSPLRLR LLDGKAEIFG YELPHEVWIT FPPLMTFAVF TWYGATIEID GITGNEYISC ETPMVNYLGL HNSLQVQRHR
101: VTSSTRDSAS SQEGPRVIIV GDIDSGKSTL AKMLLNWAVK DGWKPTFVDL NVGQSSITIP GTIAAAPIKM LVDPVEGFPL DKALIHYFGL TNPSVNLRLY
201: RTLVEELARE LKEEFSANAE SRASGMVIDT MGFIVREGYA LLLHAIRTFN ASLVIVVGQE EKLVYDLKKN LKFKKNLQVL NLEKSEGVFS RSSDFRKTLR
301: NSNIQNYFYG VTNDLTVYTK TVKFSDVQVY RIGDFRVSGS TSAHQRGNDP LKITLVTIDE HLVNKVLAIS YAIKPDQIIS SIVAGFVCIK NVDISEERIT
401: YVSPSAAELP SKILILGTLT WHVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)