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AT5G37800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : RHD SIX-LIKE 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RHD SIX-LIKE 1 (RSL1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ROOT HAIR DEFECTIVE6 (TAIR:AT1G66470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19009eggNOG:ENOG410IZQ5eggNOG:ENOG410YWETEMBL:AB016873
EMBL:CP002688EnsemblPlants:AT5G37800EnsemblPlants:AT5G37800.1entrez:833758
Gene3D:4.10.280.10GeneID:833758GO:GO:0001046GO:GO:0001228
GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0006366
GO:GO:0045944Gramene:AT5G37800.1hmmpanther:PTHR16223hmmpanther:PTHR16223:SF19
HOGENOM:HOG000006063InParanoid:Q9FJ00InterPro:IPR011598KEGG:ath:AT5G37800
OMA:EDHNSLMPaxDb:Q9FJ00Pfam:PF00010Pfam:Q9FJ00
Pfscan:PS50888PhylomeDB:Q9FJ00PRIDE:Q9FJ00PRO:PR:Q9FJ00
PROSITE:PS50888ProteinModelPortal:Q9FJ00Proteomes:UP000006548RefSeq:NP_198596.1
SMART:SM00353SMR:Q9FJ00STRING:3702.AT5G37800.1SUPFAM:SSF47459
TAIR:AT5G37800tair10-symbols:ATRSL1tair10-symbols:RSL1UniGene:At.55195
UniProt:Q9FJ00
Coordinates (TAIR10) chr5:+:15036197..15037574
Molecular Weight (calculated) 33327.40 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.65
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLINEHCNE RNYISTPNSS EDLSSPQNCG LDEGASASSS STINSDHQNN QGFVFYPSGE TIEDHNSLMD FNASSFFTFD NHRSLISPVT NGGAFPVVDG
101: NMSYSYDGWS HHQVDSISPR VIKTPNSFET TSSFGLTSNS MSKPATNHGN GDWLYSGSTI VNIGSRHEST SPKLAGNKRP FTGENTQLSK KPSSGTNGKI
201: KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSSQRDSNST
301: RETSIAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)