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AT5G28650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : WRKY DNA-binding protein 74
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group II-d
Computational
Description (TAIR10)
WRKY DNA-binding protein 74 (WRKY74); FUNCTIONS IN: calmodulin binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 39 (TAIR:AT3G04670.1); Has 3391 Blast hits to 2945 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3374; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
BioGrid:18244eggNOG:ENOG410IKRFeggNOG:ENOG410YIPUEMBL:AF272705
EMBL:AF426255EMBL:AF442398EMBL:CP002688EnsemblPlants:AT5G28650
EnsemblPlants:AT5G28650.1entrez:832971Gene3D:2.20.25.80GeneID:832971
Genevisible:Q93WU6GO:GO:0003700GO:GO:0005516GO:GO:0005634
GO:GO:0006351GO:GO:0043565Gramene:AT5G28650.1hmmpanther:PTHR31282
hmmpanther:PTHR31282:SF12HOGENOM:HOG000029200InParanoid:Q93WU6InterPro:IPR003657
InterPro:IPR018872KEGG:ath:AT5G28650MINT:MINT-1338898OMA:QGSDHIS
PaxDb:Q93WU6Pfam:PF03106Pfam:PF10533Pfam:Q93WU6
Pfscan:PS50811PRIDE:Q93WU6PRO:PR:Q93WU6PROSITE:PS50811
ProteinModelPortal:Q93WU6Proteomes:UP000006548RefSeq:NP_198217.1SMART:SM00774
SMR:Q93WU6STRING:3702.AT5G28650.1SUPFAM:0050605SUPFAM:SSF118290
TAIR:AT5G28650tair10-symbols:ATWRKY74tair10-symbols:WRKY74UniGene:At.26594
UniGene:At.28302UniProt:Q93WU6
Coordinates (TAIR10) chr5:-:10677790..10678945
Molecular Weight (calculated) 36496.80 Da
IEP (calculated) 10.08
GRAVY (calculated) -0.53
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEVEAANKA AVESCHGVLN LLSQQTNDSK SIMVETREAV CKFKRVSSLL SRGLGQRKIK KLNNNNYKFS SSLLPQHMFL ESPVCSNNAI SGCIPILAPK
101: PLQIVPAGPP PLMLFNQNMC LDKSFLELKP PSSRAVDPKP YQFIHTHQQG VYSRSKSGLN LKFDGSIGAS CYSPSISNGS RSFVSSLSMD GSVTDYDRNS
201: FHLIGLPQGS DHISQHSRRT SCSGSLKCGS KSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCVEETSMLI VTYEGEHNHS RILSSQSAHT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)