AT5G20690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.860 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G42880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:7002453..7004551 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72641.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 659 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAAVLNPGF FLLILLLSFS ISPSLQYVSE SEPLVRFKNS VKITKGDLNS WREGTDPCSG KWFGIYCQKG LTVSGIHVTR LGLSGTITVD DLKDLPNLKT 101: IRLDNNLLSG PLPHFFKLRG LKSLMLSNNS FSGEIRDDFF KDMSKLKRLF LDHNKFEGSI PSSITQLPQL EELHMQSNNL TGEIPPEFGS MKNLKVLDLS 201: TNSLDGIVPQ SIADKKNLAV NLTENEYLCG PVVDVGCENI ELNDPQEGQP PSKPSSSVPE TSNKAAINAI MVSISLLLLF FIIVGVIKRR NKKKNPDFRM 301: LANNRENDVV EVRISESSST TAKRSTDSSR KRGGHSDDGS TKKGVSNIGK GGNGGGGGAL GGGMGDIIMV NTDKGSFGLP DLMKAAAEVL GNGSLGSAYK 401: AVMTTGLSVV VKRIRDMNQL AREPFDVEMR RFGKLRHPNI LTPLAYHYRR EEKLVVSEYM PKSSLLYVLH GDRGIYHSEL TWATRLKIIQ GVAHGMKFLH 501: EEFASYDLPH GNLKSSNVLL SETYEPLISD YAFLPLLQPS NASQALFAFK TPEFAQTQQV SHKSDVYCLG IIILEILTGK FPSQYLNNGK GGTDIVQWVQ 601: SSVAEQKEEE LIDPEIVNNT ESMRQMVELL RVGAACIASN PDERLDMREA VRRIEQVKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)