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AT5G19560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.704
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ROP uanine nucleotide exchange factor 10
Curator
Summary (TAIR10)
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational
Description (TAIR10)
ROP uanine nucleotide exchange factor 10 (ROPGEF10); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 8 (TAIR:AT3G24620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17352DIP:DIP-59397NeggNOG:ENOG410JNJ1eggNOG:ENOG4111DZA
EMBL:AF296830EMBL:CP002688EMBL:DQ459196EMBL:DQ653297
EnsemblPlants:AT5G19560EnsemblPlants:AT5G19560.1entrez:832076GeneID:832076
Genevisible:Q1KS66GO:GO:0005089GO:GO:0043547Gramene:AT5G19560.1
hmmpanther:PTHR33101hmmpanther:PTHR33101:SF10HOGENOM:HOG000238290InParanoid:Q1KS66
InterPro:IPR005512iPTMnet:Q1KS66KEGG:ath:AT5G19560OMA:MYPETKE
PaxDb:Q1KS66Pfam:PF03759Pfam:Q1KS66Pfscan:PS51334
PhylomeDB:Q1KS66PRIDE:Q1KS66PRO:PR:Q1KS66PROSITE:PS51334
ProteinModelPortal:Q1KS66Proteomes:UP000006548RefSeq:NP_197457.1SMR:Q1KS66
STRING:3702.AT5G19560.1TAIR:AT5G19560tair10-symbols:ATROPGEF10tair10-symbols:ROPGEF10
UniGene:At.54917UniProt:Q1KS66
Coordinates (TAIR10) chr5:+:6603291..6606130
Molecular Weight (calculated) 56526.10 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.72
Length 493 amino acids
Sequence (TAIR10)
(BLAST)
001: MFDGRNSGHS SFSSRGDGMH TPEHELAGHA APSTRRGKQN RRSDMEVMKE RFAKLLLGED MSGGGTGETS ALALSNAITK LADSMFGEQM KLQPMYPETK
101: ENWRKEMGWL LSVIDHIVQF VPSRQMGKNG QFTEIMVTKQ RDDLLTNIPA LRKLDSVLLE TLDNFKDQKD FWYVPRDMED ADHNGDWRRD ENWWLPVVKV
201: PTDGLSEESR RWLQNQKDSV AQVLKAATAI NAHVLSEMHV PENYIDSLPK NGKTSLGDFL YKSITEESFD PDYFVSFLDL STEHKVLDLK NRIEASMVIW
301: KRKMCQKEKD GKSQWGSTVS LEKRELFEVR AETILVMLKQ QFPGIPQSSL EVSKIKNNKD VGQAILESYS RVLESLASKI MSRIEDVLEA DRLVQRQLMG
401: EAETRSESEA ESEYEETEKV VAAETPNSRK LSDFIGWRLS SDTKKHSSMS DIEFFHKVEQ EKEKPMMKSP RALPKKFSYL AKLENMRSPS DRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)