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AT5G18240.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : myb-related protein 1
Curator
Summary (TAIR10)
Encodes MYR1 (MYR1).
Computational
Description (TAIR10)
myb-related protein 1 (MYR1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIMXeggNOG:ENOG410Y9REEMBL:AB012246EMBL:CP002688
EnsemblPlants:AT5G18240EnsemblPlants:AT5G18240.1EnsemblPlants:AT5G18240.4entrez:831942
ExpressionAtlas:Q9FK47Gene3D:1.10.10.60GeneID:831942GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT5G18240.1
Gramene:AT5G18240.4hmmpanther:PTHR31499hmmpanther:PTHR31499:SF4InterPro:IPR001005
InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930InterPro:IPR025756
KEGG:ath:AT5G18240ncoils:CoilOMA:HRMELTWPfam:PF00249
Pfam:PF14379Pfscan:PS51294PhylomeDB:Q9FK47PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_197325.1RefSeq:NP_974798.1SMR:Q9FK47
STRING:3702.AT5G18240.1SUPFAM:SSF46689TAIR:AT5G18240tair10-symbols:ATMYR1
tair10-symbols:MYR1TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.7556
UniProt:Q9FK47
Coordinates (TAIR10) chr5:-:6028617..6030573
Molecular Weight (calculated) 45576.50 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.87
Length 402 amino acids
Sequence (TAIR10)
(BLAST)
001: MYYHNQHQGK SILSSSRMPI SSERHPFLRG NGTGDSGLIL STDAKPRLKW TPDLHERFVE AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS
101: KNLNGQANSS LNKTSVMTMV EENPPEVDES HSESLSIGPQ PSMNLPISDA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK YLQSILEKAQ ETLGRQNLGA
201: AGIEATKAQL SELVSKVSAD YPDSSFLEPK ELQNLHHQQM QKTYPPNSSL DSCLTSSEGT QKAPKMLDNR LGLRTYIGDS TSEQKEIMEE PFFHRMELTW
301: AEEESLRENH NRPYLSTMVN NAEPRISSSR RSPGRLSIGV GLHEHRGRSS NNSEYTEERF NENNEDCKLE THTRTALDLN THDENYGTTR PKQFDLNGFS
401: WN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)