AT5G18240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myb-related protein 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes MYR1 (MYR1). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myb-related protein 1 (MYR1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6028617..6030573 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45576.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 402 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYYHNQHQGK SILSSSRMPI SSERHPFLRG NGTGDSGLIL STDAKPRLKW TPDLHERFVE AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS 101: KNLNGQANSS LNKTSVMTMV EENPPEVDES HSESLSIGPQ PSMNLPISDA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK YLQSILEKAQ ETLGRQNLGA 201: AGIEATKAQL SELVSKVSAD YPDSSFLEPK ELQNLHHQQM QKTYPPNSSL DSCLTSSEGT QKAPKMLDNR LGLRTYIGDS TSEQKEIMEE PFFHRMELTW 301: AEEESLRENH NRPYLSTMVN NAEPRISSSR RSPGRLSIGV GLHEHRGRSS NNSEYTEERF NENNEDCKLE THTRTALDLN THDENYGTTR PKQFDLNGFS 401: WN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)