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AT5G15040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Paired amphipathic helix (PAH2) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 2 (TAIR:AT5G15020.1); Has 562 Blast hits to 542 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 194; Fungi - 132; Plants - 211; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5602eggNOG:KOG4204EMBL:AL391146EMBL:CP002688
EnsemblPlants:AT5G15040EnsemblPlants:AT5G15040.1entrez:831356Gene3D:1.20.1160.11
GeneID:831356GO:GO:0006355Gramene:AT5G15040.1hmmpanther:PTHR12346
hmmpanther:PTHR12346:SF6HOGENOM:HOG000153015InterPro:IPR003822KEGG:ath:AT5G15040
OMA:MAECRAYPfam:PF02671Pfscan:PS51477PhylomeDB:Q9LFQ1
PIR:T51449PROSITE:PS51477Proteomes:UP000006548RefSeq:NP_197008.1
SMR:Q9LFQ1STRING:3702.AT5G15040.1SUPFAM:SSF47762TAIR:AT5G15040
UniGene:At.54851UniProt:Q9LFQ1
Coordinates (TAIR10) chr5:-:4869908..4870253
Molecular Weight (calculated) 10287.20 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.43
Length 87 amino acids
Sequence (TAIR10)
(BLAST)
1: MAECRAYFME VKDTFHDQIE KYDMFKNILL DLKARRIGRH TAFAQLKELF KEHNELIIGF NTFLPTGYKI ALDDDVEDSF SSTARNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)